PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00119998001
Common NameGSBRNA2T00119998001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NF-YA
Protein Properties Length: 180aa    MW: 20294.9 Da    PI: 9.8377
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00119998001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA92.55.2e-2951110258
            CBFB_NFYA   2 eplYVNaKQyqrIlkRRqkRaklee...ekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                           ++YVN+KQy++I++RRq+Rak+++   ++kl++++rkpy+h+SRh hAlrRpRgsgGrF
  GSBRNA2T00119998001  51 GTIYVNSKQYHGIIRRRQSRAKAASvlhHNKLSSRGRKPYMHHSRHLHALRRPRGSGGRF 110
                          689*********************999999*****************************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005211.5E-2948113IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115234.3549113IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006162.2E-215274IPR001289Nuclear transcription factor Y subunit A
PfamPF020459.7E-2452110IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006162.2E-2187110IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 180 aa     Download sequence    Send to blast
MKPPCLEFGF SQPQMYTKYP CVEEEYYGVV VSAYGSQSRV MLPLNMETED GTIYVNSKQY  60
HGIIRRRQSR AKAASVLHHN KLSSRGRKPY MHHSRHLHAL RRPRGSGGRF LNTKSQKADD  120
TKQTQSQPQK SNSQNSEVIH PEGQIMNLSH GLNVSVSEVT SMNYFLTAAM DNGCLDFNT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_A2e-1750113262HAPB protein
4g92_A2e-1750113262HAPB protein
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00119998001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3529911e-117AK352991.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-19-H06.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013696108.11e-126PREDICTED: LOW QUALITY PROTEIN: nuclear transcription factor Y subunit A-2
SwissprotQ9M9X41e-95NFYA2_ARATH; Nuclear transcription factor Y subunit A-2
TrEMBLA0A078EW561e-134A0A078EW56_BRANA; BnaC05g46110D protein
STRINGAT3G05690.13e-93(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30082767
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G05690.14e-86nuclear factor Y, subunit A2
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]